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Image Search Results
Journal: Science Advances
Article Title: Oncogene EVI1 drives acute myeloid leukemia via a targetable interaction with CTBP2
doi: 10.1126/sciadv.adk9076
Figure Lengend Snippet: ( A ) Differential enrichment of proteins binding to EVI1 as determined by an EVI1 specific IP compared to a nonspecific IgG IP followed by MS in MUTZ3 nuclear protein extracts ( n = 3 for each group, thresholds log 2 FC > 1 and P value < 0.05). FC, fold change. Top 4 enriched gene identifiers are highlighted in red [MECOM (EVI1), CTBP1, and CTBP2]. In addition, several previously identified MECOM interactors are shown in gray (BioGrid). ( B ) Network plot of protein complex enrichment analysis of the proteins coprecipitated with EVI1 IP in MUTZ3 cells. The connections (edges) between proteins (nodes) were weighted on the basis of their co-occurrence in CORUM complexes. Node color represents the cluster assigned to a protein; dot size represents the fold enrichment in the IP. Font size of CTBP1 and CTBP2 was adjusted manually, and colored areas and their corresponding labels were added manually based on the common biochemical functions. The full plot with all labels is presented in fig. S1C. ( C ) Heatmaps of ChIP-seq experiments in MUTZ3 cells using antibodies directed to the indicated transcription factors or histone modifications. Ranking was based on the ChIP-seq EVI1 signal (leftmost panel) showing signal intensity of indicated ChIP-seq tracks in a ± 1000-bp region centered on EVI1 peaks (21505 peaks). ( D ) Quantification of the heatmap in (C). Normalized EVI1 signal is plotted versus the normalized reads in the indicated ChIP-seq tracks for all EVI1 peaks with a window of ±1000 bp. Correlation coefficients and linear regression equations are shown for log 10 -transformed data with a pseudo count of 1. ( E ) Heatmap of CTBP2 ChIP-seq data following dox-inducible short hairpin RNA–mediated knockdown of EVI1 (48 hours) in MOLM1 cells. On the right, EVI1 heatmap in unperturbed MOLM1 cells. Tracks are ranked on peaks in the CTBP2 control track (leftmost panel, 64,569 peaks).
Article Snippet:
Techniques: Binding Assay, ChIP-sequencing, Transformation Assay, shRNA, Knockdown, Control